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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
189
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
181
June, 2019
8
October, 2019
3
August, 2021
3
July, 2019
2
May, 2021
1
February, 2021
1
May, 2022
Available data
2799
bam
2599
bigWig
1742
bed narrowPeak
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
199
Homo sapiens
Biosample type
167
tissue
29
primary cell
3
cell line
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
connective tissue
13
vasculature
11
blood vessel
7
liver
6
pancreas
4
artery
4
eye
2
nerve
2
vein
1
adipose tissue
Project
199
AMP
Genome assembly (visualization)
192
GRCh38
177
hg19
Lab
197
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
files.file_type!
fastq
bedpe bed3+
BIOSAMPLE
ASSAY
199 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
+ See 15 more…
cell line
Panc1
1
1
HepG2
1
See all biosamples
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