Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
185
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
177
June, 2019
8
October, 2019
3
August, 2021
3
July, 2019
2
May, 2021
1
February, 2021
1
May, 2022
Available data
2792
bam
2593
bigWig
1709
bed narrowPeak
fastq
1117
tsv
1008
bigBed narrowPeak
376
tagAlign
308
bed broadPeak
272
bigBed broadPeak
242
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
195
Homo sapiens
Biosample type
164
tissue
28
primary cell
3
cell line
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
connective tissue
13
vasculature
11
blood vessel
7
liver
6
pancreas
4
artery
eye
2
nerve
2
vein
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
188
GRCh38
173
hg19
Lab
193
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
eye
files.file_type!
fastq
BIOSAMPLE
ASSAY
195 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
+ See 14 more…
cell line
Panc1
1
1
HepG2
1
See all biosamples
Download