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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
47
single cell RNA-seq
18
snATAC-seq
16
ATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
156
Transcription
154
DNA binding
34
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
234
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
365
Homo sapiens
Biosample type
238
primary cell
75
tissue
47
in vitro differentiated cells
5
cell line
Organ
47
kidney
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
connective tissue
1
thymus
Project
235
T1D
83
AMP
47
KPMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
2171
AMP-T2D consortium
318
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
fastq
BIOSAMPLE
ASSAY
365 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 30 more…
tissue
kidney
47
islet of Langerhans
5
6
11
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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