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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
90
ChIP-seq
84
RNA microarray
17
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
102
Transcription
90
DNA binding
17
DNA accessibility
Target of assay
70
histone
70
histone modification
42
broad histone mark
28
narrow histone mark
15
control
5
transcription factor
Date released
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
215
February, 2021
200
June, 2019
176
May, 2022
120
May, 2019
118
July, 2018
115
February, 2023
90
July, 2019
82
November, 2017
80
April, 2019
71
August, 2017
62
March, 2020
60
November, 2019
47
September, 2023
40
May, 2024
23
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
October, 2018
14
May, 2023
10
December, 2019
10
November, 2020
6
October, 2017
5
March, 2023
4
April, 2018
4
March, 2019
4
October, 2022
2
January, 2018
1
August, 2022
Available data
513
bam
435
bigWig
fastq
335
bed narrowPeak
312
bigBed narrowPeak
110
tsv
89
txt
86
tagAlign
70
bed broadPeak
64
bigBed broadPeak
6
csv
3
tar
1
bed bed3
1
bed bed3+
Organism
297
Homo sapiens
Biosample type
183
tissue
96
cell line
18
in vitro differentiated cells
Organ
connective tissue
386
adipose tissue
150
bone element
82
brain
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
297
AMP
Genome assembly (visualization)
175
GRCh38
125
hg19
Lab
297
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
files.file_type!
fastq
BIOSAMPLE
ASSAY
297 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
bone element
84
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
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