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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
57
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
57
DNA binding
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
181
June, 2019
53
November, 2017
9
October, 2019
8
November, 2018
3
August, 2017
1
March, 2019
1
October, 2017
Available data
2799
bam
2559
bigWig
1702
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
256
Homo sapiens
Biosample type
176
tissue
48
cell line
32
primary cell
Organ
78
kidney
52
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
9
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
256
AMP
Genome assembly (visualization)
239
GRCh38
233
hg19
Lab
254
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
connective tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
256 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
47
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
skeletal muscle myoblast
1
2
+ See 14 more…
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