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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
328
November, 2017
307
May, 2021
291
May, 2020
290
August, 2021
261
October, 2019
252
February, 2021
223
August, 2017
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
8
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
123
tsv
104
bed narrowPeak
64
xls
57
txt
49
bam
45
bigWig
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
290
Homo sapiens
Biosample type
228
tissue
44
cell line
18
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
290
AMP
Genome assembly (visualization)
89
GRCh38
41
hg19
Lab
128
Katalin Susztak, Upenn
126
AMP-T2D consortium
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
290 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
1
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