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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
400
November, 2017
397
May, 2021
341
May, 2020
308
August, 2021
286
August, 2017
263
October, 2019
194
February, 2021
193
June, 2019
166
July, 2018
156
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
78
July, 2019
73
September, 2018
70
May, 2019
66
May, 2022
60
November, 2019
58
March, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
87
fastq
86
bam
79
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
87
Homo sapiens
Biosample type
61
cell line
25
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
connective tissue
Project
87
AMP
Genome assembly (visualization)
78
GRCh38
70
hg19
Lab
87
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
connective tissue
vasculature
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
87 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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