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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
673
ChIP-seq
123
total RNA-seq
27
ATAC-seq
16
WGBS
9
DNase-seq
9
RRBS
5
GRO-seq
2
FAIRE-seq
1
Hi-C
Assay category
673
DNA binding
123
Transcription
38
DNA accessibility
25
DNA methylation
1
3D chromatin structure
Target of assay
410
transcription factor
131
histone modification
130
histone
127
control
82
recombinant protein
75
RNA binding protein
73
broad histone mark
57
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
157
August, 2017
94
December, 2017
86
November, 2018
39
February, 2018
35
December, 2018
35
October, 2018
30
January, 2019
24
May, 2022
16
October, 2017
14
July, 2019
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
March, 2019
Available data
2226
bam
2018
bigWig
1464
bed narrowPeak
920
bigBed narrowPeak
867
tsv
851
fastq
276
tagAlign
269
bed broadPeak
233
bigBed broadPeak
217
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
18
bedpe bed3+
17
hic
6
bed bed3
6
csv
3
bed bedgraph
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
858
Homo sapiens
Biosample type
427
cell line
primary cell
348
tissue
86
in vitro differentiated cells
4
stem cell
Organ
465
liver
215
pancreas
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
13
brain
7
heart
3
musculature of body
1
blood vessel
1
kidney
1
limb
1
pericardium
1
vasculature
Project
865
AMP
Genome assembly (visualization)
718
hg19
658
GRCh38
5
hg18
Lab
839
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
28
missing controlled_by
Audit category:
45
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
connective tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
865 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
GRO-seq
FAIRE-seq
Hi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
20
1
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
1
+ See 12 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
+ See 5 more…
stem cell
hESC
3
1
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