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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
pCHi-C
1
Hi-C
Assay category
1
3D chromatin structure
Date released
2
March, 2020
1
August, 2021
Available data
2799
bam
2559
bigWig
1702
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
tissue
Organ
1
adipose tissue
connective tissue
1
pancreas
Project
3
AMP
Genome assembly (visualization)
2
hg19
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
hic
BIOSAMPLE
ASSAY
3 results
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pCHi-C
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
tissue
islet of Langerhans
1
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