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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
63
ChIP-seq
Assay category
197
DNA accessibility
63
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
56
November, 2017
8
August, 2017
8
November, 2018
7
October, 2019
Available data
2437
bam
2168
bigWig
1318
bed narrowPeak
1151
fastq
1122
tsv
776
bigBed narrowPeak
276
bed broadPeak
260
bigBed broadPeak
241
tagAlign
234
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
260
Homo sapiens
Biosample type
174
tissue
51
cell line
35
primary cell
Organ
78
kidney
55
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
11
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
260
AMP
Genome assembly (visualization)
245
GRCh38
238
hg19
Lab
260
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
7
inconsistent control read length
organ_slims!
connective tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
260 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
50
Panc1
1
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
+ See 14 more…
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