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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
3
ATAC-seq
Assay category
8
Transcription
3
DNA accessibility
Date released
6
February, 2021
3
February, 2023
1
November, 2018
1
September, 2018
Available data
2799
bam
2599
bigWig
1742
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
6
tissue
3
in vitro differentiated cells
2
primary cell
Organ
5
kidney
connective tissue
1
liver
Project
11
AMP
Genome assembly (visualization)
3
hg19
Lab
8
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
1
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
11 results
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single cell RNA-seq
ATAC-seq
tissue
kidney
5
liver
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic cell
2
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