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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
113
ChIP-seq
7
Hi-C
2
ATAC-seq
Assay category
199
DNA accessibility
113
DNA binding
7
3D chromatin structure
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
39
August, 2017
10
October, 2019
8
November, 2018
4
October, 2017
3
July, 2019
3
October, 2022
1
March, 2019
Available data
2799
bam
2599
bigWig
1742
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
313
Homo sapiens
Biosample type
210
tissue
60
cell line
49
primary cell
Organ
78
kidney
64
liver
50
brain
46
musculature of body
36
limb
30
heart
27
epithelium
25
pancreas
19
vasculature
18
ureter
15
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
316
AMP
3
HPAP
Genome assembly (visualization)
296
hg19
274
GRCh38
Lab
314
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
319 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
choroid plexus epithelial cell
1
2
+ See 18 more…
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