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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
4
Hi-C
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
3
July, 2019
1
October, 2019
Available data
2799
bam
2599
bigWig
1742
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
vcf
Organism
157
Homo sapiens
Biosample type
156
primary cell
1
cell line
Organ
82
epithelium
81
pancreas
3
brain
2
blood vessel
2
vasculature
connective tissue
1
liver
Project
153
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
153
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
files.file_type!
vcf
BIOSAMPLE
ASSAY
157 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
astrocyte of the cerebellum
1
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cell line
Panc1
1
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