Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
RRBS
3
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
280
DNA accessibility
267
DNA binding
57
DNA methylation
3
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
33
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
1043
Homo sapiens
Biosample type
2200
tissue
1043
primary cell
660
cell line
293
in vitro differentiated cells
9
stem cell
Organ
401
epithelium
343
pancreas
connective tissue
36
kidney
35
vasculature
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
321
HPAP
203
T1D
Genome assembly (visualization)
589
hg19
503
GRCh38
Lab
484
AMP-T2D consortium
321
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
lab.title!
Xin Sun, UCSD
files.file_type!
hic
BIOSAMPLE
ASSAY
1043 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 81 more…
See all biosamples
Download