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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
101
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
192
Transcription
101
DNA binding
100
DNA accessibility
Target of assay
57
histone
57
histone modification
38
narrow histone mark
34
control
19
broad histone mark
10
transcription factor
6
RNA binding protein
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
336
bam
302
bigWig
191
tsv
67
bed narrowPeak
50
tagAlign
40
bigBed narrowPeak
37
fastq
Organism
394
Homo sapiens
Biosample type
244
tissue
149
primary cell
1
cell line
Organ
194
liver
53
pancreas
23
adipose tissue
connective tissue
2
epithelium
Project
349
AMP
45
T1D
Genome assembly (visualization)
302
hg19
249
GRCh38
Lab
349
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
connective tissue
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
394 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
body of pancreas
33
endocrine pancreas
16
pancreas
2
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
1
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