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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
11
total RNA-seq
6
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
42
DNA accessibility
11
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
February, 2021
69
October, 2019
32
June, 2019
8
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
1
May, 2021
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
124
tissue
1
primary cell
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
327
heart
286
brain
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
1
T1D
Genome assembly (visualization)
94
hg19
90
GRCh38
Lab
124
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
month_released!
February, 2021
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
megakaryocyte
1
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