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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
127
total RNA-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
131
DNA binding
129
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
126
May, 2021
43
December, 2017
39
February, 2018
28
August, 2021
18
February, 2021
8
March, 2020
4
January, 2018
4
October, 2019
2
December, 2019
Available data
215
bam
194
bigWig
126
tsv
86
fastq
68
bed narrowPeak
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
2
ibed
Organism
272
Homo sapiens
Biosample type
1648
tissue
723
primary cell
631
cell line
272
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
272
AMP
Genome assembly (visualization)
199
hg19
194
GRCh38
4
hg18
Lab
230
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
month_released!
July, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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