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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
750
ChIP-seq
183
DNase-seq
4
FAIRE-seq
1
ATAC-seq
Assay category
750
DNA binding
188
DNA accessibility
Target of assay
392
transcription factor
353
histone
353
histone modification
224
broad histone mark
129
narrow histone mark
81
recombinant protein
80
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
308
November, 2017
177
June, 2019
93
May, 2019
72
November, 2018
64
April, 2019
53
October, 2019
40
October, 2018
36
August, 2017
36
December, 2017
30
December, 2018
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2353
bam
2169
bigWig
1591
bed narrowPeak
985
fastq
938
bigBed narrowPeak
837
tsv
369
tagAlign
290
bed broadPeak
254
bigBed broadPeak
225
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
17
bedpe bed3+
17
hic
8
csv
6
bed bed3
3
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
932
Homo sapiens
Biosample type
551
tissue
354
cell line
33
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
epithelium
54
blood
54
bodily fluid
47
musculature of body
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
938
AMP
Genome assembly (visualization)
898
GRCh38
866
hg19
Lab
938
AMP-T2D consortium
Audit category:
28
inconsistent control
9
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
connective tissue
epithelium
month_released!
July, 2018
BIOSAMPLE
ASSAY
938 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 50 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
primary cell
skeletal muscle myoblast
14
2
skeletal muscle satellite cell
7
astrocyte of the cerebellum
2
1
cardiac muscle cell
2
1
skeletal muscle cell
1
1
+ See 2 more…
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