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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1718
ChIP-seq
1028
total RNA-seq
500
ATAC-seq
356
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
57
WGBS
52
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
87
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
July, 2019
1
August, 2017
1
August, 2022
1
November, 2018
1
October, 2019
Available data
29
fastq
21
zippedFastqFolder
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
bed bed3+
1
tar
1
txt
Organism
86
Homo sapiens
Biosample type
57
primary cell
30
tissue
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
blood vessel
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
18
T1D
11
AMP
10
LungMap
Genome assembly (visualization)
4
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
29
audit script error
organ_slims!
connective tissue
month_released!
July, 2019
BIOSAMPLE
ASSAY
87 results
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snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
tissue
lung
10
islet of Langerhans
7
1
kidney
6
pancreas
4
1
skeletal muscle tissue
1
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