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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ATAC-seq
174
single cell RNA-seq
148
ChIP-seq
127
total RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
12
Hi-C
5
RRBS
4
MeRIP-seq
3
WGBS
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
222
DNA accessibility
148
DNA binding
12
3D chromatin structure
8
DNA methylation
Target of assay
130
histone
130
histone modification
69
narrow histone mark
61
broad histone mark
15
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
228
August, 2021
94
February, 2023
93
February, 2021
74
August, 2017
54
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
30
March, 2020
23
February, 2020
19
April, 2020
14
May, 2023
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2021
1
April, 2019
1
August, 2022
1
January, 2018
1
November, 2019
Available data
bam
1238
bigWig
964
bed narrowPeak
582
tsv
549
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
807
Homo sapiens
Biosample type
808
tissue
465
primary cell
80
cell line
65
in vitro differentiated cells
6
stem cell
Organ
200
kidney
178
heart
92
bone element
74
pancreas
72
liver
53
eye
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
38
brain
34
musculature of body
20
lung
15
epithelium
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
713
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
155
GRCh38
96
hg19
Lab
481
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
organ_slims!
connective tissue
month_released!
July, 2019
files.file_type!
bam
BIOSAMPLE
ASSAY
808 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
WGBS
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
islet of Langerhans
30
40
26
7
4
3
4
bone element
84
liver
20
1
23
20
1
1
1
3
left cardiac atrium
18
40
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