Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
109
ChIP-seq
25
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
127
Transcription
109
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
60
histone
60
histone modification
31
narrow histone mark
29
broad histone mark
25
control
24
transcription factor
5
RNA binding protein
Date released
126
May, 2021
39
February, 2018
38
August, 2021
24
December, 2017
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
208
bam
182
bigWig
124
tsv
69
bed narrowPeak
67
fastq
23
tagAlign
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
273
Homo sapiens
Biosample type
2148
tissue
633
primary cell
583
cell line
273
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
273
AMP
Genome assembly (visualization)
204
hg19
191
GRCh38
4
hg18
Lab
223
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
connective tissue
epithelium
month_released!
July, 2019
BIOSAMPLE
ASSAY
273 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 19 more…
See all biosamples
Download