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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
61
total RNA-seq
43
ATAC-seq
27
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
154
Transcription
129
DNA binding
70
DNA accessibility
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
196
bigWig
181
bam
181
bed narrowPeak
156
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
359
Homo sapiens
Biosample type
293
tissue
66
cell line
Organ
940
pancreas
781
liver
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
238
GRCh38
165
hg19
Lab
319
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
organ_slims!
connective tissue
month_released!
July, 2019
BIOSAMPLE
ASSAY
359 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
35
2
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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