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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
69
total RNA-seq
47
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
89
DNA binding
47
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
June, 2019
22
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
173
bam
165
tsv
148
bigWig
118
bed narrowPeak
61
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
314
Homo sapiens
Biosample type
246
tissue
66
cell line
2
primary cell
Organ
942
pancreas
789
liver
connective tissue
504
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
314
AMP
Genome assembly (visualization)
190
GRCh38
154
hg19
Lab
314
AMP-T2D consortium
organ_slims!
connective tissue
month_released!
June, 2019
BIOSAMPLE
ASSAY
314 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
2
4
1
1
1
coronary artery
5
1
36
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
heart
1
14
4
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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