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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
pCHi-C
Assay category
4
3D chromatin structure
Date released
3
July, 2019
2
March, 2020
1
October, 2019
Available data
2798
bam
2599
bigWig
1742
bed narrowPeak
1256
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
311
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
22
bedpe bed3+
22
hic
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
tagAlign bed3+
1
vcf
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
1
cell line
Organ
3
brain
2
blood vessel
2
epithelium
2
vasculature
connective tissue
1
liver
1
pancreas
Project
6
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
month_released!
March, 2019
BIOSAMPLE
ASSAY
6 results
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Hi-C
pCHi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
Panc1
1
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