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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
10
November, 2019
7
October, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
37
bigWig
35
bam
35
bed narrowPeak
20
bigBed narrowPeak
16
fastq
14
bed broadPeak
14
bigBed broadPeak
11
tagAlign
Organism
38
Homo sapiens
Biosample type
594
tissue
229
primary cell
75
in vitro differentiated cells
38
cell line
2
stem cell
Organ
19
pancreas
18
liver
12
epithelium
1
blood
1
bodily fluid
Project
36
AMP
2
T1D
Genome assembly (visualization)
37
hg19
32
GRCh38
Lab
35
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
month_released!
March, 2019
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
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