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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
67
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
161
Transcription
89
DNA binding
74
DNA accessibility
9
DNA methylation
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
8
October, 2019
March, 2020
3
February, 2020
2
May, 2021
Available data
198
bam
173
bigWig
160
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
1
bedpe bed3+
1
hic
Organism
334
Homo sapiens
Biosample type
266
tissue
66
cell line
2
primary cell
Organ
932
pancreas
788
liver
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
334
AMP
Genome assembly (visualization)
215
GRCh38
175
hg19
Lab
334
AMP-T2D consortium
organ_slims!
connective tissue
month_released!
March, 2020
BIOSAMPLE
ASSAY
334 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
2
2
3
4
1
coronary artery
5
1
36
2
heart
1
14
4
18
1
1
1
heart right ventricle
17
13
1
2
right cardiac atrium
18
6
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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