Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
79
ChIP-seq
Assay category
194
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
178
June, 2019
64
November, 2017
14
August, 2017
9
October, 2019
8
November, 2018
Available data
2586
bam
2404
bigWig
1679
bed narrowPeak
1230
fastq
994
bigBed narrowPeak
973
tsv
359
tagAlign
305
bed broadPeak
273
bigBed broadPeak
243
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
18
hic
15
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
cool
2
bed bedgraph
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
273
Homo sapiens
Biosample type
173
tissue
59
cell line
41
primary cell
Organ
77
kidney
63
liver
38
brain
35
limb
32
musculature of body
29
heart
21
epithelium
18
ureter
16
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
273
AMP
Genome assembly (visualization)
255
GRCh38
251
hg19
Lab
273
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
month_released!
October, 2017
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
273 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 38 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 12 more…
See all biosamples
Download