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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
116
DNA binding
89
Transcription
9
DNA accessibility
9
DNA methylation
Target of assay
75
histone modification
74
histone
38
narrow histone mark
36
broad histone mark
28
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
328
November, 2017
307
May, 2021
291
May, 2020
290
August, 2021
261
October, 2019
252
February, 2021
223
August, 2017
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
215
fastq
211
bam
207
bigWig
96
bed narrowPeak
89
tsv
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
223
Homo sapiens
Biosample type
176
tissue
47
primary cell
Organ
172
pancreas
connective tissue
49
adipose tissue
34
liver
29
epithelium
11
musculature of body
Project
223
AMP
Genome assembly (visualization)
175
hg19
167
GRCh38
Lab
223
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
month_released!
October, 2017
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
33
89
1
1
liver
28
1
3
skeletal muscle tissue
7
4
pancreas
7
right lobe of liver
1
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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