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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
101
ChIP-seq
1
ATAC-seq
Assay category
198
DNA accessibility
101
DNA binding
Target of assay
61
histone
61
histone modification
49
transcription factor
34
broad histone mark
27
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
63
November, 2017
37
August, 2017
9
October, 2019
8
November, 2018
October, 2017
1
March, 2019
Available data
2692
bam
2490
bigWig
1636
bed narrowPeak
1161
fastq
1122
tsv
921
bigBed narrowPeak
362
tagAlign
299
bed broadPeak
267
bigBed broadPeak
244
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
293
Homo sapiens
Biosample type
206
tissue
55
cell line
38
primary cell
Organ
78
kidney
59
liver
46
musculature of body
41
brain
36
limb
30
heart
20
epithelium
20
pancreas
18
ureter
15
vasculature
12
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
299
AMP
Genome assembly (visualization)
276
hg19
262
GRCh38
Lab
298
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
connective tissue
month_released!
October, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
299 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 14 more…
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