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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
RNA microarray
27
snATAC-seq
21
single cell RNA-seq
17
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
117
Transcription
44
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
124
bam
113
tsv
104
bigWig
89
txt
48
fastq
22
bed narrowPeak
8
tagAlign
6
csv
1
bed bed3
1
bed bed3+
Organism
263
Homo sapiens
Biosample type
101
tissue
96
cell line
48
primary cell
18
in vitro differentiated cells
Organ
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
35
epithelium
35
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
218
AMP
45
HPAP
Genome assembly (visualization)
122
hg19
121
GRCh38
Lab
218
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
263 results
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total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
2
6
pancreatic acinar cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
See all biosamples
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