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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
269
August, 2021
188
February, 2023
180
May, 2022
159
February, 2021
106
October, 2019
95
May, 2021
81
May, 2020
79
August, 2017
72
November, 2017
56
September, 2020
47
September, 2023
42
March, 2020
29
November, 2019
23
February, 2020
23
May, 2019
22
December, 2017
22
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
11
October, 2018
10
November, 2020
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
June, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2022
1
September, 2018
Available data
123
tsv
104
bed narrowPeak
64
xls
57
txt
49
bam
bigWig
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
269
Homo sapiens
Biosample type
228
tissue
22
cell line
18
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
269
AMP
Genome assembly (visualization)
74
GRCh38
12
hg19
Lab
128
Katalin Susztak, Upenn
119
AMP-T2D consortium
22
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
bigWig
BIOSAMPLE
ASSAY
269 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
primary cell
hepatocyte
1
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