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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
25
ATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
107
DNA binding
25
DNA accessibility
20
Transcription
2
3D chromatin structure
Target of assay
43
transcription factor
41
histone
41
histone modification
23
control
21
broad histone mark
20
narrow histone mark
5
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
152
bam
108
bed narrowPeak
103
bigWig
94
fastq
50
bigBed narrowPeak
20
tsv
15
bed bed3+
2
bedpe bed3+
2
hic
Organism
154
Homo sapiens
Biosample type
87
tissue
48
in vitro differentiated cells
16
cell line
3
stem cell
Organ
63
liver
55
pancreas
35
epithelium
13
embryo
1
adipose tissue
connective tissue
Project
154
AMP
Genome assembly (visualization)
135
hg19
133
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
27
inconsistent control
25
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
154 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
liver
38
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Posterior foregut
5
definitive endodermal cell
5
+ See 2 more…
cell line
EndoC_BH1
13
1
1
1
stem cell
hESC
3
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