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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
91
ChIP-seq
Assay category
172
Transcription
91
DNA binding
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
4
transcription factor
1
control
Date released
392
November, 2017
263
May, 2021
238
May, 2020
235
October, 2019
203
August, 2017
162
July, 2018
120
May, 2019
104
February, 2021
94
December, 2017
79
April, 2019
77
November, 2018
58
July, 2019
58
September, 2018
53
October, 2018
47
April, 2018
39
August, 2021
39
February, 2018
34
December, 2018
33
November, 2019
30
January, 2019
19
June, 2019
16
March, 2020
8
October, 2017
6
May, 2022
6
September, 2017
5
December, 2019
3
August, 2018
3
June, 2018
Available data
297
bigWig
263
bam
172
tsv
120
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
263
Homo sapiens
Biosample type
136
primary cell
84
in vitro differentiated cells
38
tissue
5
cell line
Organ
44
pancreas
10
epithelium
3
heart
2
embryo
connective tissue
Project
136
T1D
127
AMP
Genome assembly (visualization)
262
GRCh38
262
hg19
Lab
135
Kyle Gaulton, UCSD
128
AMP-T2D consortium
Audit category:
73
inconsistent ontology term
organ_slims!
connective tissue
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
263 results
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total RNA-seq
ChIP-seq
primary cell
monocyte
51
84
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiomyocytes (cardiac muscle cell)
1
endothelial cell
1
+ See 8 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
cell line
EndoC_BH1
4
1
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