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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
49
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
83
Transcription
41
DNA methylation
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
23
tsv
20
bigWig
7
txt
1
bed bed3+
Organism
223
Homo sapiens
Biosample type
134
primary cell
89
tissue
Organ
105
pancreas
80
epithelium
41
liver
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
89
AMP
Genome assembly (visualization)
39
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
25
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
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