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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
120
total RNA-seq
46
single cell RNA-seq
Assay category
406
DNA binding
166
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
554
bam
496
bigWig
372
fastq
313
bed narrowPeak
312
bigBed narrowPeak
162
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
572
Homo sapiens
Biosample type
315
cell line
202
tissue
55
primary cell
Organ
315
liver
157
pancreas
91
brain
39
epithelium
6
vasculature
3
blood vessel
connective tissue
Project
572
AMP
Genome assembly (visualization)
443
hg19
442
GRCh38
Lab
572
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
572 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
315
tissue
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 12 more…
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