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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
107
ATAC-seq
65
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
107
DNA accessibility
65
DNA binding
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
297
bam
273
bigWig
189
tsv
64
tagAlign
38
bed narrowPeak
16
fastq
6
bigBed narrowPeak
4
bed broadPeak
Organism
363
Homo sapiens
Biosample type
215
tissue
147
primary cell
1
cell line
Organ
194
liver
16
brain
5
pancreas
1
adipose tissue
connective tissue
1
spleen
Project
318
AMP
45
T1D
Genome assembly (visualization)
272
hg19
220
GRCh38
Lab
317
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
363 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 1 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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