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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
505
ATAC-seq
170
DNase-seq
83
snATAC-seq
5
FAIRE-seq
Assay category
1679
DNA binding
1428
Transcription
763
DNA accessibility
84
DNA methylation
27
3D chromatin structure
1
DNA sequencing
Date released
148
June, 2019
100
May, 2020
98
May, 2022
95
February, 2023
80
August, 2021
44
February, 2021
34
May, 2021
30
October, 2019
25
November, 2019
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
9
August, 2017
9
November, 2018
8
July, 2019
7
August, 2020
7
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
September, 2020
1
August, 2022
1
January, 2018
Available data
442
bed narrowPeak
342
bam
298
bigWig
195
bigBed narrowPeak
166
bed broadPeak
164
bigBed broadPeak
163
bed bed3+
98
fastq
64
xls
60
zippedFastqFolder
14
tsv
6
bed bed3
3
bed bedgraph
3
txt
1
tar
Organism
762
Homo sapiens
Biosample type
428
tissue
279
primary cell
31
cell line
25
in vitro differentiated cells
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
musculature of body
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
627
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
394
GRCh38
385
hg19
Lab
495
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
41
inconsistent ontology term
28
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
musculature of body
BIOSAMPLE
ASSAY
763 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 51 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 53 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
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