Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
DNase-seq
100
ChIP-seq
2
ATAC-seq
Assay category
166
DNA accessibility
100
DNA binding
Target of assay
51
histone
51
histone modification
49
transcription factor
28
broad histone mark
23
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
148
June, 2019
70
November, 2017
26
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2742
bam
2491
bigWig
1642
bed narrowPeak
1255
fastq
1113
tsv
967
bigBed narrowPeak
361
tagAlign
266
bed broadPeak
243
bigBed broadPeak
212
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
hic
20
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
260
Homo sapiens
Biosample type
165
tissue
59
cell line
42
primary cell
Organ
78
kidney
63
liver
47
brain
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
266
AMP
Genome assembly (visualization)
243
hg19
240
GRCh38
Lab
264
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
connective tissue
musculature of body
BIOSAMPLE
ASSAY
266 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 38 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 13 more…
See all biosamples
Download