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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
DNase-seq
91
ChIP-seq
2
ATAC-seq
Assay category
166
DNA accessibility
91
DNA binding
Target of assay
51
histone
51
histone modification
49
transcription factor
28
broad histone mark
23
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
148
June, 2019
63
November, 2017
24
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2649
bam
2435
bigWig
1587
bed narrowPeak
1175
fastq
1113
tsv
880
bigBed narrowPeak
361
tagAlign
257
bed broadPeak
234
bigBed broadPeak
210
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
hic
20
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
251
Homo sapiens
Biosample type
165
tissue
55
cell line
37
primary cell
Organ
78
kidney
59
liver
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
18
ureter
15
vasculature
12
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
257
AMP
Genome assembly (visualization)
234
hg19
233
GRCh38
Lab
255
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
connective tissue
musculature of body
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
257 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 38 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 13 more…
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