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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1514
ChIP-seq
866
total RNA-seq
471
ATAC-seq
364
single cell RNA-seq
170
DNase-seq
86
RNA microarray
83
snATAC-seq
68
WGBS
35
pCHi-C
27
Hi-C
15
RRBS
13
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Date released
13
July, 2019
2
August, 2017
Available data
15
bed bedMethyl
15
bigBed bedMethyl
2
fastq
Organism
15
Homo sapiens
Biosample type
8
primary cell
7
tissue
Organ
6
epithelium
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
connective tissue
1
eye
1
pericardium
1
vasculature
Project
15
AMP
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
musculature of body
month_released!
May, 2021
BIOSAMPLE
ASSAY
15 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 3 more…
tissue
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
liver
1
+ See 2 more…
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