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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
DNase-seq
79
ChIP-seq
Assay category
164
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
148
June, 2019
64
November, 2017
14
August, 2017
9
October, 2019
8
November, 2018
Available data
2742
bam
2531
bigWig
1682
bed narrowPeak
1255
fastq
1113
tsv
967
bigBed narrowPeak
361
tagAlign
266
bed broadPeak
243
bigBed broadPeak
212
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
hic
20
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
243
Homo sapiens
Biosample type
142
tissue
59
cell line
42
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
adipose tissue
2
nerve
1
spleen
Project
243
AMP
Genome assembly (visualization)
225
GRCh38
221
hg19
Lab
243
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
musculature of body
adipose tissue
BIOSAMPLE
ASSAY
243 results
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DNase-seq
ChIP-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 34 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 13 more…
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