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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1674
ChIP-seq
1047
total RNA-seq
505
ATAC-seq
364
single cell RNA-seq
170
DNase-seq
86
RNA microarray
83
snATAC-seq
68
WGBS
51
pCHi-C
27
Hi-C
15
RRBS
13
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
83
DNA accessibility
Date released
27
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
Organism
82
Homo sapiens
Biosample type
56
primary cell
27
tissue
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
musculature of body
Project
48
HPAP
18
T1D
10
LungMap
7
AMP
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
28
audit script error
organ_slims!
connective tissue
musculature of body
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
83 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
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