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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
727
ChIP-seq
571
total RNA-seq
253
ATAC-seq
179
single cell RNA-seq
144
DNase-seq
86
RNA microarray
27
snATAC-seq
23
pCHi-C
20
WGBS
13
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
763
Transcription
727
DNA binding
428
DNA accessibility
27
DNA methylation
10
3D chromatin structure
Target of assay
570
histone modification
569
histone
302
narrow histone mark
267
broad histone mark
159
control
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
193
May, 2020
190
August, 2017
130
June, 2019
120
July, 2018
104
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
74
April, 2019
64
May, 2022
60
July, 2019
47
September, 2023
41
October, 2018
40
May, 2021
39
November, 2019
35
May, 2024
34
March, 2020
22
October, 2017
21
February, 2020
19
April, 2020
18
November, 2018
17
December, 2017
14
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
Available data
1293
bam
1158
bigWig
850
bed narrowPeak
612
tsv
453
bigBed narrowPeak
270
fastq
215
tagAlign
165
bed broadPeak
157
bed bed3+
156
txt
142
bigBed broadPeak
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2063
Homo sapiens
Biosample type
2071
tissue
1026
primary cell
301
cell line
270
in vitro differentiated cells
9
stem cell
Organ
connective tissue
488
pancreas
471
adipose tissue
322
liver
301
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1974
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1261
GRCh38
1141
hg19
Lab
1724
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
8
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
musculature of body
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2071 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
63
292
68
6
1
7
4
3
1
1
4
liver
108
167
20
1
2
1
3
1
1
1
kidney
26
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
30
3
2
18
3
1
4
1
1
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