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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
397
transcription factor
336
histone
336
histone modification
170
broad histone mark
166
narrow histone mark
143
control
89
recombinant protein
81
RNA binding protein
32
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
2
December, 2018
1
August, 2017
1
December, 2017
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
32
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
30
cell line
tissue
1
in vitro differentiated cells
1
primary cell
Organ
21
liver
10
blood
10
bodily fluid
connective tissue
1
epithelium
Project
32
AMP
Genome assembly (visualization)
32
hg19
30
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
organ_slims!
connective tissue
musculature of body
biosample_type!
tissue
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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