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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
17
ATAC-seq
5
total RNA-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
63
DNA binding
17
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
29
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
43
May, 2021
18
August, 2021
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
October, 2019
2
December, 2019
Available data
232
bam
bigWig
126
tsv
87
bed narrowPeak
86
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
95
Homo sapiens
Biosample type
927
tissue
468
primary cell
140
cell line
95
in vitro differentiated cells
6
stem cell
Organ
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
95
AMP
Genome assembly (visualization)
27
hg19
21
GRCh38
Lab
53
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
organ_slims!
connective tissue
nerve
files.file_type!
bigWig
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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