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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
12
ATAC-seq
7
single cell RNA-seq
4
total RNA-seq
2
DNase-seq
1
RRBS
1
pCHi-C
Assay category
14
DNA accessibility
14
DNA binding
11
Transcription
1
DNA methylation
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
13
June, 2019
8
May, 2020
6
February, 2023
6
July, 2018
3
May, 2019
2
October, 2019
1
July, 2019
1
June, 2018
1
May, 2021
Available data
33
bam
28
bigWig
17
tsv
15
bed narrowPeak
13
bigBed narrowPeak
7
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
41
Homo sapiens
Biosample type
111
in vitro differentiated cells
92
cell line
90
tissue
41
primary cell
Organ
connective tissue
10
epithelium
8
kidney
8
musculature of body
6
heart
5
pancreas
1
liver
1
vasculature
Project
36
AMP
5
T1D
Genome assembly (visualization)
31
hg19
26
GRCh38
Lab
36
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
30
audit script error
organ_slims!
connective tissue
vein
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
epithelial cell of proximal tubule
3
1
1
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
gabaergic neuron
3
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