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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
19
ChIP-seq
Assay category
194
DNA accessibility
19
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
181
June, 2019
14
August, 2017
8
November, 2018
6
November, 2017
4
October, 2019
Available data
2197
bam
2062
bigWig
1325
bed narrowPeak
1003
tsv
830
fastq
646
bigBed narrowPeak
356
tagAlign
249
bed broadPeak
241
bed bed3+
213
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
19
bedpe bed3+
19
hic
8
csv
5
bed bed3
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
174
tissue
cell line
39
primary cell
Organ
78
kidney
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
6
pancreas
5
liver
4
artery
4
eye
vein
2
adipose tissue
2
nerve
1
spleen
Project
213
AMP
Genome assembly (visualization)
211
GRCh38
191
hg19
Lab
213
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
vein
biosample_type!
cell line
BIOSAMPLE
ASSAY
213 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 13 more…
See all biosamples
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