Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1701
ChIP-seq
1059
total RNA-seq
506
ATAC-seq
359
single cell RNA-seq
201
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
31
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
201
DNA accessibility
Date released
181
June, 2019
8
November, 2018
8
October, 2019
4
August, 2017
Available data
198
bam
198
bed narrowPeak
198
bigBed narrowPeak
198
bigWig
195
bed broadPeak
195
bigBed broadPeak
194
bed bed3+
10
fastq
Organism
201
Homo sapiens
Biosample type
176
tissue
23
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
201
AMP
Genome assembly (visualization)
196
GRCh38
176
hg19
Lab
201
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
connective tissue
vein
BIOSAMPLE
ASSAY
201 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
Download