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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
93
single cell RNA-seq
74
total RNA-seq
48
ATAC-seq
29
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
168
Transcription
124
DNA binding
77
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
53
broad histone mark
31
narrow histone mark
29
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
50
October, 2019
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
7
March, 2020
4
February, 2020
2
May, 2021
Available data
242
bam
206
bigWig
172
bed narrowPeak
170
tsv
114
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
384
Homo sapiens
Biosample type
316
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
384
AMP
Genome assembly (visualization)
248
GRCh38
210
hg19
Lab
384
AMP-T2D consortium
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
384 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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