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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
70
ChIP-seq
Assay category
197
DNA accessibility
70
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
57
November, 2017
12
August, 2017
9
October, 2019
8
November, 2018
Available data
2706
bam
2468
bigWig
1612
bed narrowPeak
1177
fastq
1122
tsv
927
bigBed narrowPeak
376
tagAlign
303
bed broadPeak
267
bigBed broadPeak
244
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
267
Homo sapiens
Biosample type
174
tissue
55
cell line
38
primary cell
Organ
78
kidney
59
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
267
AMP
Genome assembly (visualization)
251
GRCh38
245
hg19
Lab
267
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
267 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 14 more…
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